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Species belonging to selected taxon:
Cynodon dactylon
,
Eragrostis curvula
,
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST003644
species:
Zea mays
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCCACAGCTTTCTTGAACTG
miRNA*
GTTCAATAAAGCTGTGGGAAA
mismatches:
1
bulges:
0
View larger
pre-miRNA
GCCGACGAGACATGGCCCTCCTTGCCGTC
TCCCACAGCTTTCTTGAACTG
CATGCCGCCGGCTGGTGGATGCTGCGCGCTGAAATTCCGGTCGATCCCAA
GAGGCGCA
GTTCAATAAAGCTGTGGGAAA
CTGCAGAGAGAGGCCACCAGCCGATC
dot-bracket secondary structure
............((((((((.((((.((.
((((((((((((.((((((((
(..(((..(((((((.....((.....)).......))))))).......
..))))))
)))))).)))))))))))).)
).)))).))).)))))..........
SIMILARITIES
miRBase
zma-MIR396a
:
1e-66
PMRD
zma-miR396a
:
1e-66
microPC
miR396
:
0.000008
UniProt
no hits
RFAM
MIR396: 1e-54
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record